Insightful Accountant | Blog

Amazon Accounting 101: What Every Bookkeeper Needs to Know Before Taking on a Seller

Written by Rachel Dauchy | Apr 23, 2026 3:07:10 PM

So…you took on (maybe even accidentally), or are thinking about taking on, your first Amazon client, opened up their books, looked at the deposits hitting the bank… and thought:

“Okay… this should be straightforward.”

And then about five minutes later:

“Wait. Why does none of this match?”

If that sounds familiar, welcome. You’re in the right place.

Amazon accounting is one of those things that looks simple from the outside—but once you get into it, you realize it’s a completely different kind of puzzle. And you know I love a challenge.

Let’s walk through the basics, the nuances, and a few things I wish I knew before I got started.

Amazon ≠ Your Bank Feed (And That’s the First Problem)

The biggest mistake I see (and yes, I’ve done it too) is trying to treat Amazon like a standard income stream.

You see a deposit hit the bank and think, “Great, that’s income.”

It’s not.

Amazon deposits are net of everything:

  • Fees
  • Refunds
  • Adjustments
  • Reserves

So, what hits the bank is not your client’s actual sales, but rather what’s left over after Amazon takes its cut (and sometimes holds on to more).

If you’re trying to match deposits directly to sales, you’re going to drive yourself crazy.

Instead, you have to shift your mindset to:
The bank feed is not your source of truth…Amazon is.

Understanding Settlement Reports (Without Losing Your Mind)

Amazon doesn’t operate in daily clean transactions like Shopify or Stripe. Instead, everything is grouped into settlement periods, usually every 2 weeks.

Each settlement includes:

  • Gross sales
  • Fees (so many fees)
  • Refunds
  • Shipping
  • Adjustments
  • Reserve activity

At first glance, these reports can feel overwhelming. There are a lot of moving parts, and it’s easy to get lost in the details.

Here’s the key:
👉 You don’t need every single line item, you need a system.

Most of the time, the goal is to:

  • Capture total sales
  • Break out major expense categories
  • Reconcile to the net deposit + reserve movement

Once you understand how the pieces fit together, it becomes much more manageable.

Fees, Fees, and… More Fees

If there’s one thing Amazon is really good at, it’s charging fees.

Some of the most common ones you’ll see:

  • Referral fees (Amazon’s cut of each sale)
  • FBA fees (if they’re fulfilling orders)
  • Storage fees
  • Advertising costs

And they’re not always grouped in ways that make sense at first glance.

This is where your role becomes more than just recording transactions; you’re helping your client understand where their money is actually going.

Because here’s the truth:
You can have strong sales and still be unprofitable on Amazon.

Breaking out fees clearly is one of the biggest value-adds you can provide.

Inventory: Where Things Get Interesting

If your client is using Amazon FBA (Fulfilled by Amazon), inventory adds another layer to the puzzle.

Now we’re not just dealing with:

  • Sales
  • Expenses

We’re dealing with:

  • Inventory being shipped to Amazon
  • Inventory sitting in Amazon warehouses
  • Inventory being sold (and sometimes returned)

And here’s the tricky part:
Cash movement and inventory movement don’t happen at the same time.

Your client might:

  • Purchase inventory this month
  • Sell it next month
  • Get paid weeks later

So if you’re only looking at cash, you’re missing the bigger picture.

This is why understanding inventory accounting, even at a basic level, is so important for Amazon clients.

And yes, it can get messy. But it’s also where things start to click once you understand the flow.

Common Amazon Accounting Mistakes (We’ve All Been There)

Amazon accounting has a learning curve, and that’s okay. Here are a few common mistakes I see:

1. Recording deposits as income
We already talked about this one… it’s probably the most common.

2. Ignoring reserves
Amazon often holds back a portion of funds. If you’re not accounting for that, your books won’t tie.

3. Not reconciling settlements
If you’re not tying your entries back to the settlement reports, things can drift quickly.

4. Overcomplicating everything
You don’t need to recreate Amazon line by line in QuickBooks. Keep it clean and summarized.

It’s a Puzzle…And That’s the Fun Part

Here’s the thing: Amazon accounting isn’t broken. It’s just different.

Once you understand:

  • How settlements work
  • How fees are structured
  • How inventory flows

…it starts to make sense.

And if you’re like me—if you enjoy problem-solving, figuring things out, and building systems that actually work—this niche can be incredibly rewarding.

Every client is a little different:

  • Different product types
  • Different fulfillment methods
  • Different sales channels

Which means every set of books is its own puzzle.

You Don’t Have to Have It All Figured Out

If you’re new to Amazon accounting, don’t feel like you need to know everything right away.

Start simple:

  • Understand the flow
  • Build a repeatable process
  • Ask questions when something doesn’t make sense

The more you work with it, the more it clicks.

And once it clicks? It opens up a whole new level of value you can provide to your clients—not just bookkeeping, but real insight into how their business is performing.

What’s Next?

Once you understand the basics, the next step is figuring out how to make this process efficient, because doing Amazon accounting manually is… not ideal.

In my next article, I’ll walk through the tools I actually use and how I build a tech stack that works (without overcomplicating everything).

If you’ve been thinking about getting into ecommerce accounting (or you’re already in it and trying to make sense of Amazon), just know this:

  • You’re not behind.
  • You’re not the only one confused at first.
  • And you can figure this out.

It’s just another puzzle. And you’ve got this.